If the engine cannot ever run after 1/3 tank then I would guess there is a hole in the pickup tube so it is sucking air that is easier than sucking fuel.
It might be that the problem does not directly correlate to the fuel level. That would not be my first guess.
The invaluable tool required for the arsenal is a fuel pressure gauge. The engine won't go w/o fuel pressure.
The usage is "easy". It screws onto a standard Schrader valve, like on a bicycle, on the fuel rail feeding the injectors. The main concern is that fuel is very flammable, so connecting / disconnecting / usage needs to be done w/ appropriate care, especially on top of a hot engine and in a closed compartment.
There is negligible difference between sucking from a full tank and one w/ 1/3 gone.
The other suspect is a poor electrical connection on the fuel shutoff solenoids. They are on the forward wall of the engine compartment. How do the electrical connections look at that point?
Assuming your Parker / Skinner fuel solenoids are like mine, then try operating the engines w/ the twist valve arrow pointed to the left, to off, so it provides fuel only under electrical control. Then if there is a problem, twist the knob to the right, to on, so it always provides fuel. The normal default operation should always be w/ the arrow to the left.
Otherwise treat the boat like a patient, "it hurts when I do that", "don't do that".